add nextflow d30e48d

This commit is contained in:
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions

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@@ -0,0 +1,21 @@
set -e
export NXF_ASSETS=$PWD/assets
#
# First run test `success` is `true`
#
set +e
echo ''
$NXF_RUN > stdout
status=$?
set -e
# the exit status must NOT be zero because the pipeline throws an error
[ $status -ne 0 ] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo'` == 3 ]] || false
[[ `grep -c 'success: false' stdout` == 1 ]] || false
[[ `grep -c 'exitStatus: 99' stdout` == 1 ]] || false
[[ `grep -c 'run_1' stdout` == 1 ]] || false
[[ `grep -c 'run_2' stdout` == 1 ]] || false