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add nextflow d30e48d

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Kevin
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions
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35
nextflow/tests/checks/each-file.nf/.checks Normal file
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set -e
#
# run normal mode
#
echo ''
$NXF_RUN | tee stdout
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo (p1.fa)'` == 1 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo (p2.fa)'` == 1 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo (p3.fa)'` == 1 ]] || false
[[ `< stdout grep -c '>1ycsB'` == 2 ]] || false
[[ `< stdout grep -c '>1pht'` == 2 ]] || false
[[ `< stdout grep -c '>1aboA'` == 1 ]] || false
[[ `< stdout grep -c '>1ihvA'` == 1 ]] || false
[[ `< stdout grep -c '>1vie'` == 1 ]] || false
#
# run resume mode
#
echo ''
$NXF_RUN -resume | tee stdout
[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > foo (p1.fa)'` == 1 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > foo (p2.fa)'` == 1 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > foo (p3.fa)'` == 1 ]] || false
[[ `< stdout grep -c '>1ycsB'` == 2 ]] || false
[[ `< stdout grep -c '>1pht'` == 2 ]] || false
[[ `< stdout grep -c '>1aboA'` == 1 ]] || false
[[ `< stdout grep -c '>1ihvA'` == 1 ]] || false
[[ `< stdout grep -c '>1vie'` == 1 ]] || false