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add nextflow d30e48d

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Kevin
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions
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44
nextflow/tests/checks/complex-names.nf/.checks Normal file
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set -e
#
# basic run
#
echo ''
$NXF_RUN > stdout
[[ `<stdout grep -c 'Hello world!'` == 1 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo'` == 1 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > bar'` == 1 ]] || false
( cd foo;
[[ -s f1.fa ]] || false
[[ -s f2.fa ]] || false
[[ -s f3.fa ]] || false
[[ -s hello.txt ]] || false
[[ -s sample.zip ]] || false
[[ -s sample.html ]] || false
[[ -s '01_A(R1).fastq' ]] || false
[[ -s '01_A(R2).fastq' ]] || false
[[ -s 'sample_(1 2).vcf' ]] || false
[[ -s .alpha/hello.txt ]] || false
)
#
# resume
#
rm -rf foo
echo ''
$NXF_RUN -resume > stdout
[[ `<stdout grep -c 'Hello world!'` == 1 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > foo'` == 1 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > bar'` == 1 ]] || false
( cd foo;
[[ -s f1.fa ]] || false
[[ -s f2.fa ]] || false
[[ -s f3.fa ]] || false
[[ -s hello.txt ]] || false
[[ -s sample.zip ]] || false
[[ -s sample.html ]] || false
[[ -s '01_A(R1).fastq' ]] || false
[[ -s '01_A(R2).fastq' ]] || false
[[ -s 'sample_(1 2).vcf' ]] || false
[[ -s .alpha/hello.txt ]] || false
)