kevin/ma
1
0
Fork 0
Code Issues 1 Packages Activity

add nextflow d30e48d

Browse Source
This commit is contained in:
Kevin
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions
Download Patch File Download Diff File Expand all files Collapse all files

34
nextflow/tests/checks/collect-record.nf/.checks Normal file
View File

@@ -0,0 +1,34 @@
set -e
#
# run normal mode
#
echo ''
echo \$ $NXF_RUN
$NXF_RUN | tee stdout
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > align'` == 6 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > merge'` == 2 ]] || false
[[ `grep -c 'barcode: alpha' stdout` == 1 ]] || false
[[ `grep -c 'barcode: gamma' stdout` == 1 ]] || false
[[ `grep -c 'bam : bam1 bam2 bam3' stdout` == 2 ]] || false
[[ `grep -c 'bai : bai1 bai2 bai3' stdout` == 2 ]] || false
[[ `grep -c 'seq_ids' stdout` == 2 ]] || false
#
# RESUME mode
#
echo ''
echo \$ $NXF_RUN -resume
$NXF_RUN -resume | tee stdout
[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > align'` == 6 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > merge'` == 2 ]] || false
[[ `grep -c 'barcode: alpha' stdout` == 1 ]] || false
[[ `grep -c 'barcode: gamma' stdout` == 1 ]] || false
[[ `grep -c 'bam : bam1 bam2 bam3' stdout` == 2 ]] || false
[[ `grep -c 'bai : bai1 bai2 bai3' stdout` == 2 ]] || false
[[ `grep -c 'seq_ids' stdout` == 2 ]] || false