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add nextflow d30e48d

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Kevin
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions
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20
nextflow/tests/checks/blast.nf/.checks Normal file
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set -e
#
# run normal mode
#
$NXF_RUN $WITH_DOCKER | tee .stdout
[[ `grep INFO .nextflow.log | grep -c 'Submitted process > blast'` == 5 ]] || false
[[ `grep INFO .nextflow.log | grep -c 'Submitted process > sort'` == 1 ]] || false
diff .expected .stdout || false
#
# run resume mode
#
$NXF_RUN $WITH_DOCKER -resume | tee .stdout
[[ `grep INFO .nextflow.log | grep -c 'Cached process > blast'` == 5 ]] || false
[[ `grep INFO .nextflow.log | grep -c 'Cached process > sort'` == 1 ]] || false
diff .expected .stdout || false

34
nextflow/tests/checks/blast.nf/.expected Normal file
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1aboA 1ABO:A 100.00 57 0 0 1 57 5 61 2e-40 120
1aboA 1ABO:B 100.00 57 0 0 1 57 5 61 2e-40 120
1aboA 1IHD:A 36.11 36 21 1 5 40 287 320 0.62 18.1
1aboA 1IHD:A 75.00 8 2 0 28 35 179 186 0.69 17.7
1aboA 1IHD:C 36.11 36 21 1 5 40 287 320 0.62 18.1
1aboA 1IHD:C 75.00 8 2 0 28 35 179 186 0.69 17.7
1aboA 1YCS:B 25.49 51 36 1 5 53 175 225 3e-04 27.3
1ihvA 1IHN:A 35.00 20 13 0 25 44 72 91 7.0 14.6
1ihvA 1IHN:A 66.67 9 3 0 35 43 28 36 3.7 15.4
1ihvA 1IHN:B 35.00 20 13 0 25 44 72 91 7.0 14.6
1ihvA 1IHN:B 66.67 9 3 0 35 43 28 36 3.7 15.4
1ihvA 1IHU:A 27.27 33 24 0 8 40 534 566 5.5 15.0
1ihvA 1IHV:A 100.00 49 0 0 1 49 4 52 3e-32 99.8
1ihvA 1IHV:B 100.00 49 0 0 1 49 4 52 3e-32 99.8
1ihvA 1IHW:A 100.00 49 0 0 1 49 4 52 3e-32 99.8
1ihvA 1IHW:B 100.00 49 0 0 1 49 4 52 3e-32 99.8
1ihvA 1YCS:A 54.55 11 5 0 1 11 107 117 0.88 17.3
1pht 1IHF:B 33.33 21 14 0 53 73 60 80 0.75 18.1
1pht 1IHS:H 32.00 25 17 0 40 64 175 199 4.0 16.5
1pht 1IHT:H 32.00 25 17 0 40 64 175 199 4.0 16.5
1pht 1PHT:A 100.00 80 0 0 1 80 5 84 1e-56 164
1pht 1YCS:B 23.08 26 20 0 19 44 115 140 3.4 16.5
1pht 1YCS:B 30.43 23 16 0 6 28 175 197 0.015 23.5
1vie 1IHM:A 31.82 22 11 1 19 40 343 360 9.0 14.6
1vie 1IHM:B 31.82 22 11 1 19 40 343 360 9.0 14.6
1vie 1IHM:C 31.82 22 11 1 19 40 343 360 9.0 14.6
1vie 1IHU:A 26.92 26 18 1 25 49 156 181 8.5 14.6
1vie 1VIE:A 100.00 51 0 0 1 51 12 62 1e-35 108
1ycsB 1ABO:A 24.07 54 39 1 3 56 6 57 4e-05 28.5
1ycsB 1ABO:B 24.07 54 39 1 3 56 6 57 4e-05 28.5
1ycsB 1IHU:A 35.71 14 9 0 6 19 251 264 6.9 15.4
1ycsB 1PHT:A 30.43 23 16 0 6 28 10 32 0.013 22.3
1ycsB 1YCS:B 100.00 60 0 0 1 60 170 229 3e-42 131