add nextflow d30e48d

2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions
--- a/nextflow/tests/checks/blast-parallel.nf/.expected
+++ b/nextflow/tests/checks/blast-parallel.nf/.expected
@@ -0,0 +1,284 @@
+CLUSTAL FORMAT for T-COFFEE Version_11.00.8cbe486 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=338, Nseq=18, Len=694 
+
+lcl|1VIE_A      VF-------PS----NA---------------------------T-----
+lcl|1IHU_A      MQFL-----QNIPPY-LFFTGKGGVGKTSISCATAIRLAEQGKRVLLVST
+lcl|1ABO_B      MND------PN-----L---------------------------------
+lcl|1ABO_A      MND------PN-----L---------------------------------
+lcl|1YCS_B      PEITGQVSLPP---GKR---------------------------TNL---
+lcl|1IHD_C      LPN-------------I---------------------------------
+lcl|1IHW_B      MIQ-----------------------------------------------
+lcl|1IHW_A      MIQ-----------------------------------------------
+lcl|1IHV_B      MIQ-----------------------------------------------
+lcl|1IHV_A      MIQ-----------------------------------------------
+lcl|1YCS_A      SS-----SVPS----QK---------------------------T-----
+lcl|1PHT_A      MS------------------------------------------------
+lcl|1YCS_B_1    PEITGQVSLPP---GKR---------------------------TNL---
+lcl|1YCS_B_2    PEITGQVSLPP---GKR---------------------------TNL---
+lcl|1YCS_B_3    PEITGQVSLPP---GKR---------------------------TNL---
+lcl|1ABO_B_1    MND------PN-----L---------------------------------
+lcl|1ABO_A_1    MND------PN-----L---------------------------------
+lcl|1PHT_A_1    MS------------------------------------------------
+                                                                  
+
+lcl|1VIE_A      -----------F------------------------GM-GDRVR------
+lcl|1IHU_A      DPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQYRARIVDPIK
+lcl|1ABO_B      ----------------------------------------FVA-------
+lcl|1ABO_A      ----------------------------------------FVA-------
+lcl|1YCS_B      ------RKTGSER-----------------------IAHGMRVKF-----
+lcl|1IHD_C      ------------------------------------------------T-
+lcl|1IHW_B      ---------------------------------------NFRVYY-----
+lcl|1IHW_A      ---------------------------------------NFRVYY-----
+lcl|1IHV_B      ---------------------------------------NFRVYY-----
+lcl|1IHV_A      ---------------------------------------NFRVYY-----
+lcl|1YCS_A      -----------YQ-----------------------GSYGFRLGF-----
+lcl|1PHT_A      --------------------------------------------------
+lcl|1YCS_B_1    ------RKTGSER-----------------------IAHGMRVKF-----
+lcl|1YCS_B_2    ------RKTGSER-----------------------IAHGMRVKF-----
+lcl|1YCS_B_3    ------RKTGSER-----------------------IAHGMRVKF-----
+lcl|1ABO_B_1    ----------------------------------------FVA-------
+lcl|1ABO_A_1    ----------------------------------------FVA-------
+lcl|1PHT_A_1    --------------------------------------------------
+                                                                  
+
+lcl|1VIE_A      --------------------------KKSGA-------------------
+lcl|1IHU_A      GVLPDDVVSSINEQLSGACTTEIAAFDE-FTGLLTDASLLTRFDHIIFDT
+lcl|1ABO_B      --------------------------------------------------
+lcl|1ABO_A      --------------------------------------------------
+lcl|1YCS_B      --------------------------NPLPLALLLDSSLEGEFDLV----
+lcl|1IHD_C      -------------------------------ILATGGTIAGGGDSA----
+lcl|1IHW_B      --------------------------------------------------
+lcl|1IHW_A      --------------------------------------------------
+lcl|1IHV_B      --------------------------------------------------
+lcl|1IHV_A      --------------------------------------------------
+lcl|1YCS_A      --------------------------LHSGTA------------------
+lcl|1PHT_A      --------------------------------------------------
+lcl|1YCS_B_1    --------------------------NPLPLALLLDSSLEGEFDLV----
+lcl|1YCS_B_2    --------------------------NPLPLALLLDSSLEGEFDLV----
+lcl|1YCS_B_3    --------------------------NPLPLALLLDSSLEGEFDLV----
+lcl|1ABO_B_1    --------------------------------------------------
+lcl|1ABO_A_1    --------------------------------------------------
+lcl|1PHT_A_1    --------------------------------------------------
+                                                                  
+
+lcl|1VIE_A      --------------------------------------------------
+lcl|1IHU_A      APTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEAL
+lcl|1ABO_B      --------------------------------------------------
+lcl|1ABO_A      --------------------------------------------------
+lcl|1YCS_B      --------------------------------------------------
+lcl|1IHD_C      --------------------------------------------------
+lcl|1IHW_B      --------------------------------------------------
+lcl|1IHW_A      --------------------------------------------------
+lcl|1IHV_B      --------------------------------------------------
+lcl|1IHV_A      --------------------------------------------------
+lcl|1YCS_A      --------------------------------------------------
+lcl|1PHT_A      --------------------------------------------------
+lcl|1YCS_B_1    --------------------------------------------------
+lcl|1YCS_B_2    --------------------------------------------------
+lcl|1YCS_B_3    --------------------------------------------------
+lcl|1ABO_B_1    --------------------------------------------------
+lcl|1ABO_A_1    --------------------------------------------------
+lcl|1PHT_A_1    --------------------------------------------------
+                                                                  
+
+lcl|1VIE_A      --------------------------------------------------
+lcl|1IHU_A      SDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEA
+lcl|1ABO_B      --------------------------------------------------
+lcl|1ABO_A      --------------------------------------------------
+lcl|1YCS_B      --------------------------------------------------
+lcl|1IHD_C      --------------------------------------------------
+lcl|1IHW_B      --------------------------------------------------
+lcl|1IHW_A      --------------------------------------------------
+lcl|1IHV_B      --------------------------------------------------
+lcl|1IHV_A      --------------------------------------------------
+lcl|1YCS_A      --------------------------------------------------
+lcl|1PHT_A      --------------------------------------------------
+lcl|1YCS_B_1    --------------------------------------------------
+lcl|1YCS_B_2    --------------------------------------------------
+lcl|1YCS_B_3    --------------------------------------------------
+lcl|1ABO_B_1    --------------------------------------------------
+lcl|1ABO_A_1    --------------------------------------------------
+lcl|1PHT_A_1    --------------------------------------------------
+                                                                  
+
+lcl|1VIE_A      --------------------------------------------------
+lcl|1IHU_A      ANDTLAAAI----------WEREQEALANLPADLAGLPTDTLFLQPVNMV
+lcl|1ABO_B      --------------------------------------------------
+lcl|1ABO_A      --------------------------------------------------
+lcl|1YCS_B      -----QRIIYEVDDPSLPND-----------------------------E
+lcl|1IHD_C      -----TKSN----------YTVG-------------------------KV
+lcl|1IHW_B      --------------------------------------------------
+lcl|1IHW_A      --------------------------------------------------
+lcl|1IHV_B      --------------------------------------------------
+lcl|1IHV_A      --------------------------------------------------
+lcl|1YCS_A      --------------------------------------------------
+lcl|1PHT_A      -------------A------------------------------------
+lcl|1YCS_B_1    -----QRIIYEVDDPSLPND-----------------------------E
+lcl|1YCS_B_2    -----QRIIYEVDDPSLPND-----------------------------E
+lcl|1YCS_B_3    -----QRIIYEVDDPSLPND-----------------------------E
+lcl|1ABO_B_1    --------------------------------------------------
+lcl|1ABO_A_1    --------------------------------------------------
+lcl|1PHT_A_1    -------------A------------------------------------
+                                                                  
+
+lcl|1VIE_A      --------------------------------------------------
+lcl|1IHU_A      GVSALSRLLSTQPVASPSSDEYLQQRPDIPSLSALVDDIARNEHGLI---
+lcl|1ABO_B      --------------------------------------------------
+lcl|1ABO_A      --------------------------------------------------
+lcl|1YCS_B      GITALHN------------------------------AVCAGHTEIVKFL
+lcl|1IHD_C      GVE-----------------------------------------------
+lcl|1IHW_B      --------------------------------------------------
+lcl|1IHW_A      --------------------------------------------------
+lcl|1IHV_B      --------------------------------------------------
+lcl|1IHV_A      --------------------------------------------------
+lcl|1YCS_A      -----KS------------------------------VTC----------
+lcl|1PHT_A      --------------------------------------------------
+lcl|1YCS_B_1    GITALHN------------------------------AVCAGHTEIVKFL
+lcl|1YCS_B_2    GITALHN------------------------------AVCAGHTEIVKFL
+lcl|1YCS_B_3    GITALHN------------------------------AVCAGHTEIVKFL
+lcl|1ABO_B_1    --------------------------------------------------
+lcl|1ABO_A_1    --------------------------------------------------
+lcl|1PHT_A_1    --------------------------------------------------
+                                                                  
+
+lcl|1VIE_A      -------------AWQGQIVGWYCTNLTPE--GYAVES----EAHPGSVQ
+lcl|1IHU_A      ----------------------------------M---------------
+lcl|1ABO_B      --------------------------------------------------
+lcl|1ABO_A      --------------------------------------------------
+lcl|1YCS_B      VQFGVNVNAADSDGWTPLHCAASCNNVQVC--KFLVES----GAAVFAMT
+lcl|1IHD_C      ----------------------------------N---------------
+lcl|1IHW_B      -------R------------------------------------------
+lcl|1IHW_A      -------R------------------------------------------
+lcl|1IHV_B      -------R------------------------------------------
+lcl|1IHV_A      -------R------------------------------------------
+lcl|1YCS_A      -------------TYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMA
+lcl|1PHT_A      --------------------------------------------------
+lcl|1YCS_B_1    VQFGVNVNAADSDGWTPLHCAASCNNVQVC--KFLVES----GAAVFAMT
+lcl|1YCS_B_2    VQFGVNVNAADSDGWTPLHCAASCNNVQVC--KFLVES----GAAVFAMT
+lcl|1YCS_B_3    VQFGVNVNAADSDGWTPLHCAASCNNVQVC--KFLVES----GAAVFAMT
+lcl|1ABO_B_1    --------------------------------------------------
+lcl|1ABO_A_1    --------------------------------------------------
+lcl|1PHT_A_1    --------------------------------------------------
+                                                                  
+
+lcl|1VIE_A      -----I--------------------------------------------
+lcl|1IHU_A      -------------------------------------------LMGKGGV
+lcl|1ABO_B      -------------------------------------------LYDFVAS
+lcl|1ABO_A      -------------------------------------------LYDFVAS
+lcl|1YCS_B      YSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGV-IYALWDYEPQ
+lcl|1IHD_C      -------------------------------------------LVNAVPQ
+lcl|1IHW_B      ------------------------------------------DSRDPVWK
+lcl|1IHW_A      ------------------------------------------DSRDPVWK
+lcl|1IHV_B      ------------------------------------------DSRDPVWK
+lcl|1IHV_A      ------------------------------------------DSRDPVWK
+lcl|1YCS_A      -----I--------------------------------------------
+lcl|1PHT_A      ------------------------------------EGYQYRALYDYKKE
+lcl|1YCS_B_1    YSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGV-IYALWDYEPQ
+lcl|1YCS_B_2    YSDMQTAADKCEEMEEGYTQCSQFLYG-----------------------
+lcl|1YCS_B_3    YSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGV-IYALWDYEPQ
+lcl|1ABO_B_1    -------------------------------------------LYDFVAS
+lcl|1ABO_A_1    -------------------------------------------LYDFVAS
+lcl|1PHT_A_1    ------------------------------------EGYQYRALYDYKKE
+                                                                  
+
+lcl|1VIE_A      --------------------------------------------------
+lcl|1IHU_A      GKTTMAAAIAVRLADMGFD------VHLTTSDP-------AAHLS-MTLN
+lcl|1ABO_B      GDNTLS----ITKGEKLRV--------LGYNH-------NGEWCE---AQ
+lcl|1ABO_A      GDNTLS----ITKGEKLRV--------LGYNH-------NGEWCE---AQ
+lcl|1YCS_B      NDDELPM----KEGDCMTI--------IHREDED-----EIEWWW---AR
+lcl|1IHD_C      -LKDIA----NVKGEQVVN--------IGSQDMN-----DNVWLT---LA
+lcl|1IHW_B      GPAKL-----LWKGEGAVV--------IQDNS-------DIK--------
+lcl|1IHW_A      GPAKL-----LWKGEGAVV--------IQDNS-------DIK--------
+lcl|1IHV_B      GPAKL-----LWKGEGAVV--------IQDNS-------DIK--------
+lcl|1IHV_A      GPAKL-----LWKGEGAVV--------IQDNS-------DIK--------
+lcl|1YCS_A      --------------------------------------------------
+lcl|1PHT_A      REEDIDL----HLGDILTVNKGSLVA-LGFSDGQEARPEEIGWLNGY-NE
+lcl|1YCS_B_1    NDDELPM----KEGDCMTI--------IHREDED-----EIEWWW---AR
+lcl|1YCS_B_2    --------------------------------------------------
+lcl|1YCS_B_3    NDDELPM----KEGDCMTI--------IHREDED-----EIEWWW---AR
+lcl|1ABO_B_1    GDNTLS----ITKGEKLRV--------LGYNH-------NGEWCE---AQ
+lcl|1ABO_A_1    GDNTLS----ITKGEKLRV--------LGYNH-------NGEWCE---AQ
+lcl|1PHT_A_1    REEDIDL----HLGDILTVNKGSLVA-LGFSDGQEARPEEIGWLNGY-NE
+                                                                  
+
+lcl|1VIE_A      --------------------------------------------------
+lcl|1IHU_A      GSLNNLQVSRIDPHEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTE
+lcl|1ABO_B      --TK----------------------------------------------
+lcl|1ABO_A      --TK----------------------------------------------
+lcl|1YCS_B      -L-N----------------------------------------------
+lcl|1IHD_C      KKIN----------------------------------------------
+lcl|1IHW_B      --------------------------------------------------
+lcl|1IHW_A      --------------------------------------------------
+lcl|1IHV_B      --------------------------------------------------
+lcl|1IHV_A      --------------------------------------------------
+lcl|1YCS_A      --------------------------------------------------
+lcl|1PHT_A      -T-T----------------------------------------------
+lcl|1YCS_B_1    -L-N----------------------------------------------
+lcl|1YCS_B_2    --------------------------------------------------
+lcl|1YCS_B_3    -L-N----------------------------------------------
+lcl|1ABO_B_1    --TK----------------------------------------------
+lcl|1ABO_A_1    --TK----------------------------------------------
+lcl|1PHT_A_1    -T-T----------------------------------------------
+                                                                  
+
+lcl|1VIE_A      --------------------------------------------------
+lcl|1IHU_A      EIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGE
+lcl|1ABO_B      --------------------------------------------------
+lcl|1ABO_A      --------------------------------------------------
+lcl|1YCS_B      --------------------------------------------------
+lcl|1IHD_C      -------------TDCDKT-------------------------------
+lcl|1IHW_B      --------------------------------------------------
+lcl|1IHW_A      --------------------------------------------------
+lcl|1IHV_B      --------------------------------------------------
+lcl|1IHV_A      --------------------------------------------------
+lcl|1YCS_A      --------------------------------------------------
+lcl|1PHT_A      --------------------------------------------------
+lcl|1YCS_B_1    --------------------------------------------------
+lcl|1YCS_B_2    --------------------------------------------------
+lcl|1YCS_B_3    --------------------------------------------------
+lcl|1ABO_B_1    --------------------------------------------------
+lcl|1ABO_A_1    --------------------------------------------------
+lcl|1PHT_A_1    --------------------------------------------------
+                                                                  
+
+lcl|1VIE_A      --------------------------------------------------
+lcl|1IHU_A      KGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGW
+lcl|1ABO_B      ---------------------------------------------NGQGW
+lcl|1ABO_A      ---------------------------------------------NGQGW
+lcl|1YCS_B      ---------------------------------------------DKEGY
+lcl|1IHD_C      --------------------------------------------------
+lcl|1IHW_B      -------------------------------------------------V
+lcl|1IHW_A      -------------------------------------------------V
+lcl|1IHV_B      -------------------------------------------------V
+lcl|1IHV_A      -------------------------------------------------V
+lcl|1YCS_A      --------------------------------------------------
+lcl|1PHT_A      ---------------------------------------------GERGD
+lcl|1YCS_B_1    ---------------------------------------------DKEGY
+lcl|1YCS_B_2    --------------------------------------------------
+lcl|1YCS_B_3    ---------------------------------------------DKEGY
+lcl|1ABO_B_1    ---------------------------------------------NGQGW
+lcl|1ABO_A_1    ---------------------------------------------NGQGW
+lcl|1PHT_A_1    ---------------------------------------------GERGD
+                                                                  
+
+lcl|1VIE_A      Y-PVAA-LERI---------------------N-----------
+lcl|1IHU_A      I-INNS-LSIADTRSPLLRMRAQQELPQIESVKR----QHAS--
+lcl|1ABO_B      V-PSNY-ITPV---------------------NS----------
+lcl|1ABO_A      V-PSNY-ITPV---------------------NS----------
+lcl|1YCS_B      V-PRNL-LGLY---------------------PRIKPRQRSL-A
+lcl|1IHD_C      --------------------------------------------
+lcl|1IHW_B      V-PRRKA-KII----------------------RD---------
+lcl|1IHW_A      V-PRRKA-KII----------------------RD---------
+lcl|1IHV_B      V-PRRKA-KII----------------------RD---------
+lcl|1IHV_A      V-PRRKA-KII----------------------RD---------
+lcl|1YCS_A      YKQSQHMTEV----------------------V-----------
+lcl|1PHT_A      F-PGTY-VEYI---------------------GR----KKISPP
+lcl|1YCS_B_1    V-PRNL-LGLY---------------------PRIKPRQRSL-A
+lcl|1YCS_B_2    --------------------------------------------
+lcl|1YCS_B_3    V-PRNL-LGLY---------------------PRIKPRQRSL-A
+lcl|1ABO_B_1    V-PSNY-ITPV---------------------NS----------
+lcl|1ABO_A_1    V-PSNY-ITPV---------------------NS----------
+lcl|1PHT_A_1    F-PGTY-VEYI---------------------GR---------K
+                                                            
+
+
+