add nextflow d30e48d

nextflow/tests/ampa.nf

@@ -0,0 +1,32 @@
+#!/usr/bin/env nextflow 
+
+params.in = "$baseDir/data/sample.fa"
+
+
+/*
+ * For each sequence that is sent over the 'seq' channel
+ * the below task is executed
+ */
+process ampaTask {
+
+    input:
+    path seq
+
+    output:
+    path 'result'
+
+    // The BASH script to be executed - for each - sequence
+    script:
+    """
+    AMPA.pl -in=${seq} -noplot -rf=result -df=data
+    """
+
+}
+
+workflow {
+    channel.fromPath(params.in) |
+            splitFasta(file:true) |
+            ampaTask |
+            view { it.text }
+}
+