add nextflow d30e48d

nextflow/test-e2e/run.sh

@@ -0,0 +1,92 @@
+#
+# Copyright 2013-2026, Seqera Labs
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+# cleanup
+rm -rf .nextflow && mkdir .nextflow
+# copy nextflow dependencies
+(cd ..
+export NXF_PLUGINS_DIR=$PWD/build/plugins
+make releaseInfo assemble installScratch
+)
+
+# copy nextflow plugins
+cp -r ../build/plugins .nextflow/
+# copy nextflow launcher script
+cp ../nextflow . && chmod +x nextflow
+cp ../modules/nextflow/src/main/resources/META-INF/build-info.properties .
+source build-info.properties
+
+if [ -z "$version" ]; then
+    echo "Error: version is empty or missing"; exit 1
+fi
+if [ -z "$build" ]; then
+    echo "Error: build is empty or missing"; exit 1
+fi
+if [ -z "$commitId" ]; then
+    echo "Error: commitId is empty or missing"; exit 1
+fi
+
+echo "version  : $version"
+echo "build    : $build"
+echo "commit id: $commitId"
+
+#
+# build a scratch container image with assembled nextflow runtime and plugins
+#
+tag=${version}-${commitId}
+base=${base:-'public.cr.seqera.io/platform/nf-launcher:j17-base'}
+repository=${repository:-'public.cr.seqera.io/snapshots/nextflow-scratch'}
+image=${repository}:${tag}
+
+docker buildx build \
+  --platform linux/amd64 \
+  --push \
+  --progress=plain \
+  --tag ${image} \
+  --build-arg TARGETPLATFORM=linux/amd64 \
+  .
+echo "Nextflow snapshots launcher image $image"
+
+#
+# Create an ephemeral container with the scratch image and base Platform launcher image
+#
+launcher=$(wave -i ${base} --include ${image} --platform linux/amd64 --config-env NXF_HOME=/.nextflow --config-env NXF_SYNTAX_PARSER=v1)
+echo "Running Platform tests using image launcher: $launcher"
+
+# determining the e2e test environment checking the $COMMIT_MESSAGE
+# that is set by GitHub action workflow. If it does not exist fallback
+# to the commit message in the git rpeo
+if [ -z "$COMMIT_MESSAGE" ]; then
+  COMMIT_MESSAGE=$(git show -s --format='%s')
+  echo "Commit message [from git]: $COMMIT_MESSAGE"
+else
+  echo "Commit message [from gha]: $COMMIT_MESSAGE"
+fi
+if echo "$COMMIT_MESSAGE" | grep -q "\[e2e prod\]"; then
+  ENVIRONMENT="production"
+else
+  ENVIRONMENT="staging"
+fi
+
+#
+# Finally launch the showcase automation
+# see https://github.com/seqeralabs/showcase-automation/
+echo "Launching seqera-showcase-${ENVIRONMENT}"
+gh workflow run \
+  seqera-showcase-${ENVIRONMENT}.yml \
+  --repo seqeralabs/showcase-automation \
+  -f launch_container=${launcher}
+