add nextflow d30e48d

nextflow/test-ci.sh

@@ -0,0 +1,37 @@
+#!/bin/bash
+#
+# Copyright 2013-2026, Seqera Labs
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+#
+# setup env for integration tests
+#
+TEST_JDK=${TEST_JDK:=11}
+X_BRANCH=${TRAVIS_BRANCH:-${CIRCLE_BRANCH:-'master'}}
+X_PULL_REQUEST=${TRAVIS_PULL_REQUEST:-false}
+## handle github variables
+[[ $GITHUB_REF ]] && X_BRANCH=$(echo $GITHUB_REF | awk '{n=split($1,A,"/"); print A[n]}')
+[[ $GITHUB_EVENT_NAME == pull_request ]] && X_PULL_REQUEST=true
+
+export WITH_DOCKER='-with-docker'
+export NXF_CMD=$PWD/nextflow;
+export TEST_JDK
+export TEST_MODE
+
+(
+ $NXF_CMD info
+ cd validation
+ bash -x test.sh
+)