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nextflow/plugins/nf-seqera/README.md

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+# Seqera Executor plugin for Nextflow
+
+## Summary
+
+The Seqera Executor plugin provides integration with Seqera Cloud for executing Nextflow tasks using Seqera's managed compute infrastructure.
+
+## Get Started
+
+To use this plugin, add it to your `nextflow.config`:
+
+```groovy
+plugins {
+    id 'nf-seqera'
+}
+```
+
+Configure the Seqera executor:
+
+```groovy
+process {
+    executor = 'seqera'
+}
+
+seqera {
+    executor {
+        region = 'eu-west-1'
+        autoLabels = true
+    }
+}
+
+tower {
+    accessToken = '<SEQERA ACCESS TOKEN>'
+}
+
+```
+
+Alternatively, set the access token via environment variable:
+
+```bash
+export TOWER_ACCESS_TOKEN='<YOUR ACCESS TOKEN>'
+```
+
+## Examples
+
+### Running a workflow with the Seqera executor
+
+`nextflow.config`:
+
+```groovy
+plugins {
+    id 'nf-seqera'
+}
+
+process {
+    executor = 'seqera'
+}
+
+tower {
+    accessToken = '<SEQERA ACCESS TOKEN>'
+}
+
+seqera {
+    executor {
+        region = 'eu-west-1'
+    }
+}
+```
+
+`main.nf`:
+
+```groovy
+process HELLO {
+    output:
+    path 'hello.txt'
+
+    script:
+    '''
+    echo "Hello from Seqera Cloud" > hello.txt
+    '''
+}
+
+workflow {
+    HELLO()
+}
+```
+
+### Using resource labels for cost tracking
+
+```groovy
+seqera {
+    executor {
+        region = 'us-east-1'
+        labels = [team: 'genomics', project: 'wgs-analysis']
+        autoLabels = true
+    }
+}
+```
+
+### Using the resource prediction model
+
+```groovy
+seqera {
+    executor {
+        region = 'eu-west-1'
+        predictionModel = 'qr/v1'
+    }
+}
+```
+
+## Resources
+
+- [Seqera Platform Documentation](https://docs.seqera.io/)
+
+## License
+
+[Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0)