add nextflow d30e48d

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2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions

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/*
* Copyright 2013-2026, Seqera Labs
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
plugins {
id 'io.nextflow.nextflow-plugin' version "${nextflowPluginVersion}"
id 'java-test-fixtures'
}
nextflowPlugin {
nextflowVersion = '25.12.0-edge'
provider = "${nextflowPluginProvider}"
description = 'Enables Google Cloud Platform execution through Batch service with native Cloud Storage access and intelligent machine type selection'
className = 'nextflow.cloud.google.GoogleCloudPlugin'
useDefaultDependencies = false
generateSpec = false
extensionPoints = [
'nextflow.cloud.google.GoogleOpts',
'nextflow.cloud.google.batch.GoogleBatchExecutor',
'nextflow.cloud.google.util.GsPathFactory',
'nextflow.cloud.google.util.GsPathSerializer',
]
}
sourceSets {
main.java.srcDirs = []
main.groovy.srcDirs = ['src/main']
main.resources.srcDirs = ['src/resources']
test.groovy.srcDirs = ['src/test']
test.java.srcDirs = []
test.resources.srcDirs = []
}
configurations {
// see https://docs.gradle.org/4.1/userguide/dependency_management.html#sub:exclude_transitive_dependencies
runtimeClasspath.exclude group: 'org.slf4j', module: 'slf4j-api'
}
dependencies {
compileOnly project(':nextflow')
compileOnly 'org.slf4j:slf4j-api:2.0.17'
compileOnly 'org.pf4j:pf4j:3.14.1'
api 'com.google.auth:google-auth-library-oauth2-http:1.39.1'
api 'com.google.cloud:google-cloud-batch:0.75.0'
api 'com.google.cloud:google-cloud-logging:3.23.5'
api 'com.google.cloud:google-cloud-nio:0.128.5'
api 'com.google.cloud:google-cloud-storage:2.58.0'
api 'io.seqera:lib-cloudinfo:1.0.0'
// Force patched version to address CVE-2025-55163 (MadeYouReset HTTP/2 DDoS vulnerability)
runtimeOnly 'io.grpc:grpc-netty-shaded:1.75.0'
// Force patched version to address GHSA-72hv-8253-57qq (jackson-core Number Length Constraint Bypass DoS)
runtimeOnly 'com.fasterxml.jackson.core:jackson-core:2.18.6'
testImplementation(testFixtures(project(":nextflow")))
testImplementation "org.apache.groovy:groovy:4.0.31"
testImplementation "org.apache.groovy:groovy-nio:4.0.31"
}
test {
useJUnitPlatform()
}