add nextflow d30e48d

This commit is contained in:
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions

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/*
* Copyright 2013-2026, Seqera Labs
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
plugins {
id 'io.nextflow.nextflow-plugin' version "${nextflowPluginVersion}"
id 'java-test-fixtures'
}
nextflowPlugin {
nextflowVersion = '25.09.0-edge'
provider = "${nextflowPluginProvider}"
description = 'Provides seamless integration with AWS CodeCommit repositories for workflow source code management and version control'
className = 'nextflow.cloud.aws.codecommit.AwsCodeCommitPlugin'
useDefaultDependencies = false
generateSpec = false
extensionPoints = [
'nextflow.cloud.aws.codecommit.AwsCodeCommitFactory'
]
}
sourceSets {
main.java.srcDirs = []
main.groovy.srcDirs = ['src/main']
main.resources.srcDirs = ['src/resources']
test.groovy.srcDirs = ['src/test']
test.java.srcDirs = []
test.resources.srcDirs = ['src/testResources']
}
configurations {
// see https://docs.gradle.org/4.1/userguide/dependency_management.html#sub:exclude_transitive_dependencies
runtimeClasspath.exclude group: 'org.slf4j', module: 'slf4j-api'
}
dependencies {
compileOnly project(':nextflow')
compileOnly 'org.slf4j:slf4j-api:2.0.17'
compileOnly 'org.pf4j:pf4j:3.14.1'
api ('javax.xml.bind:jaxb-api:2.4.0-b180830.0359')
api ('software.amazon.awssdk:codecommit:2.31.64')
api ('software.amazon.awssdk:sso:2.31.64')
api ('software.amazon.awssdk:ssooidc:2.31.64')
// address security vulnerabilities
runtimeOnly 'io.netty:netty-codec-http:4.1.132.Final'
testImplementation(testFixtures(project(":nextflow")))
testImplementation project(':nextflow')
testImplementation "org.apache.groovy:groovy:4.0.31"
testImplementation "org.apache.groovy:groovy-nio:4.0.31"
}