add nextflow d30e48d

nextflow/plugins/nf-azure/build.gradle

@@ -0,0 +1,74 @@
+/*
+ * Copyright 2013-2026, Seqera Labs
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+plugins {
+    id 'io.nextflow.nextflow-plugin' version "${nextflowPluginVersion}"
+    id 'java-test-fixtures'
+}
+
+nextflowPlugin {
+    nextflowVersion = '25.11.0-edge'
+
+    provider = "${nextflowPluginProvider}"
+    description = 'Enables Azure cloud execution through Batch service with native Blob storage access and comprehensive authentication options'
+    className = 'nextflow.cloud.azure.AzurePlugin'
+    useDefaultDependencies = false
+    generateSpec = false
+    extensionPoints = [
+        'nextflow.cloud.azure.batch.AzBatchExecutor',
+        'nextflow.cloud.azure.config.AzConfig',
+        'nextflow.cloud.azure.file.AzPathFactory',
+        'nextflow.cloud.azure.file.AzPathSerializer',
+        'nextflow.cloud.azure.fusion.AzFusionEnv',
+    ]
+}
+
+sourceSets {
+    main.java.srcDirs = []
+    main.groovy.srcDirs = ['src/main']
+    main.resources.srcDirs = ['src/resources']
+    test.groovy.srcDirs = ['src/test']
+    test.java.srcDirs = ['src/testResources']
+    test.resources.srcDirs = []
+}
+
+configurations {
+    // see https://docs.gradle.org/4.1/userguide/dependency_management.html#sub:exclude_transitive_dependencies
+    runtimeClasspath.exclude group: 'org.slf4j', module: 'slf4j-api'
+}
+
+dependencies {
+    compileOnly project(':nextflow')
+    compileOnly 'org.slf4j:slf4j-api:2.0.17'
+    compileOnly 'org.pf4j:pf4j:3.14.1'
+    api('com.azure:azure-storage-blob:12.33.2') {
+        exclude group: 'org.slf4j', module: 'slf4j-api'
+    }
+    api('com.azure:azure-compute-batch:1.0.0-beta.3') {
+        exclude group: 'org.slf4j', module: 'slf4j-api'
+        exclude group: 'com.google.guava', module: 'guava'
+    }
+    api('com.azure:azure-identity:1.18.2') {
+        exclude group: 'org.slf4j', module: 'slf4j-api'
+    }
+
+    // Force patched version to address GHSA-72hv-8253-57qq (jackson-core Number Length Constraint Bypass DoS)
+    runtimeOnly 'com.fasterxml.jackson.core:jackson-core:2.18.6'
+
+    testImplementation(testFixtures(project(":nextflow")))
+    testImplementation project(':nextflow')
+    testImplementation "org.apache.groovy:groovy:4.0.31"
+    testImplementation "org.apache.groovy:groovy-nio:4.0.31"
+}