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+
+# Nextflow
+
+*"Dataflow variables are spectacularly expressive in concurrent programming"*
+<br />[Henri E. Bal , Jennifer G. Steiner , Andrew S. Tanenbaum](https://dl.acm.org/doi/abs/10.1145/72551.72552)
+
+[![Nextflow CI](https://github.com/nextflow-io/nextflow/workflows/Nextflow%20CI/badge.svg)](https://github.com/nextflow-io/nextflow/actions/workflows/build.yml?query=branch%3Amaster+event%3Apush)
+[![Nextflow version](https://img.shields.io/github/release/nextflow-io/nextflow.svg?colorB=58bd9f&style=popout)](https://github.com/nextflow-io/nextflow/releases/latest)
+[![Nextflow Twitter](https://img.shields.io/twitter/url/https/nextflowio.svg?colorB=58bd9f&&label=%40nextflow&style=popout)](https://twitter.com/nextflowio)
+[![Nextflow Publication](https://img.shields.io/badge/Published-Nature%20Biotechnology-26af64.svg?colorB=58bd9f&style=popout)](https://www.nature.com/articles/nbt.3820)
+[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?colorB=58bd9f&style=popout)](http://bioconda.github.io/recipes/nextflow/README.html)
+[![Nextflow license](https://img.shields.io/github/license/nextflow-io/nextflow.svg?colorB=58bd9f&style=popout)](https://github.com/nextflow-io/nextflow/blob/master/COPYING)
+
+Nextflow is a workflow system for creating scalable, portable, and reproducible workflows. It uses a dataflow programming model that simplifies writing parallel and distributed pipelines by allowing you to focus on data flow and computation. Nextflow can deploy workflows on a variety of execution platforms, including your local machine, HPC schedulers, and cloud. Additionally, Nextflow supports a range of compute environments, software container runtimes, and package managers, allowing workflows to be executed in reproducible and isolated environments.
+
+## Get started
+
+To get started with Nextflow:
+
+1. See the Nextflow {ref}`overview <overview-page>` to learn key concepts.
+2. Download and {ref}`install <install-page>` Nextflow.
+3. Set up an {ref}`environment <devenv-page>` with the {ref}`Nextflow VS Code extension <devenv-nextflow>`.
+4. Run {ref}`your first script <your-first-script>`.
+
+To continue learning about Nextflow, visit the [Nextflow community training portal](https://training.nextflow.io/latest/) and find a training course that is right for you. Seqera, the company that develops Nextflow, also runs a variety of training events. See [Seqera Events](https://seqera.io/events/) for more information.
+
+## Community
+
+You can post questions in the [Nextflow community forum](https://community.seqera.io) or the [Nextflow Slack](https://www.nextflow.io/slack-invite.html). Bugs and feature requests should be reported as [GitHub issues](https://github.com/nextflow-io/nextflow/issues/new/choose).
+
+The Nextflow community is highly active with regular community meetings, events, a podcast, and more. You can view this material on the [Nextflow](https://www.youtube.com/@Nextflow) YouTube channel.
+
+The [nf-core](https://nf-co.re/) project is a community effort aggregating high-quality Nextflow workflows that can be used by everyone.
+
+## Contributing
+
+Contributions to Nextflow are welcome. See {ref}`Contributing <contributing-page>` for more details.
+
+## License
+
+Nextflow is released under the Apache 2.0 license. Nextflow is a [registered trademark](https://github.com/nextflow-io/trademark).
+
+## Citations
+
+If you use Nextflow in your work, please cite:
+
+P. Di Tommaso, et al. Nextflow enables reproducible computational workflows. Nature Biotechnology 35, 316–319 (2017) doi:[10.1038/nbt.3820](http://www.nature.com/nbt/journal/v35/n4/full/nbt.3820.html)
+
+```{toctree}
+:hidden:
+:caption: Get started
+:maxdepth: 1
+
+overview
+install
+developer-env
+your-first-script
+```
+
+```{toctree}
+:hidden:
+:caption: Running pipelines
+:maxdepth: 1
+
+cli
+config
+executor
+cache-and-resume
+reports
+```
+
+```{toctree}
+:hidden:
+:caption: Developing pipelines
+:maxdepth: 1
+
+script
+working-with-files
+process
+process-typed
+workflow
+workflow-typed
+notifications
+secrets
+sharing
+vscode
+```
+
+```{toctree}
+:hidden:
+:caption: Modules
+:maxdepth: 1
+
+modules/modules
+modules/using-modules
+modules/developing-modules
+modules/module-registry
+```
+
+```{toctree}
+:hidden:
+:caption: Software dependencies
+:maxdepth: 1
+
+git
+container
+conda
+spack
+wave
+```
+
+```{toctree}
+:hidden:
+:caption: Compute & storage
+:maxdepth: 1
+
+aws
+amazons3
+azure
+google
+kubernetes
+fusion
+```
+
+```{toctree}
+:hidden:
+:caption: Plugins
+:maxdepth: 1
+
+plugins/plugins
+plugins/using-plugins
+plugins/developing-plugins
+plugins/plugin-registry
+```
+
+```{toctree}
+:hidden:
+:caption: Language Reference
+:maxdepth: 1
+
+reference/feature-flags
+reference/syntax
+reference/stdlib
+reference/process
+reference/channel
+reference/operator-typed
+reference/operator
+```
+
+```{toctree}
+:hidden:
+:caption: Runtime Reference
+:maxdepth: 1
+
+reference/cli
+reference/config
+reference/env-vars
+```
+
+```{toctree}
+:hidden:
+:caption: Updates
+:maxdepth: 1
+
+updating-nextflow
+strict-syntax
+migrations/index
+```
+
+```{toctree}
+:hidden:
+:caption: Contributing
+:maxdepth: 1
+
+developer/index
+developer/diagram
+developer/config-scopes
+developer/packages
+```
+
+```{toctree}
+:hidden:
+:caption: Tutorials
+:maxdepth: 1
+
+tutorials/rnaseq-nf
+tutorials/data-lineage
+tutorials/workflow-outputs
+tutorials/static-types
+tutorials/static-types-operators
+tutorials/metrics
+tutorials/flux
+```
+
+```{toctree}
+:hidden:
+:caption: Guides
+:maxdepth: 1
+
+guides/aws-java-sdk-v2
+guides/gradle-plugin
+guides/migrate-plugin
+guides/updating-spot-retries
+```