add nextflow d30e48d
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351
nextflow/config/codenarc/codenarc.groovy
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351
nextflow/config/codenarc/codenarc.groovy
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/*
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* Copyright 2013-2026, Seqera Labs
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*
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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*/
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ruleset {
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description '''
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A Sample Groovy RuleSet containing all CodeNarc Rules, grouped by category.
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You can use this as a template for your own custom RuleSet.
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Just delete the rules that you don't want to include.
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'''
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// rulesets/basic.xml
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AssertWithinFinallyBlock
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AssignmentInConditional
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BigDecimalInstantiation
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BitwiseOperatorInConditional
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BooleanGetBoolean
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BrokenNullCheck
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BrokenOddnessCheck
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ClassForName
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ComparisonOfTwoConstants
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ComparisonWithSelf
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ConstantAssertExpression
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ConstantIfExpression
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ConstantTernaryExpression
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DeadCode
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DoubleNegative
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DuplicateCaseStatement
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DuplicateMapKey
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DuplicateSetValue
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EmptyCatchBlock
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EmptyElseBlock
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EmptyFinallyBlock
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EmptyForStatement
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EmptyIfStatement
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EmptyInstanceInitializer
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EmptyMethod
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EmptyStaticInitializer
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EmptySwitchStatement
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EmptySynchronizedStatement
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EmptyTryBlock
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EmptyWhileStatement
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EqualsAndHashCode
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EqualsOverloaded
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ExplicitGarbageCollection
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ForLoopShouldBeWhileLoop
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HardCodedWindowsFileSeparator
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HardCodedWindowsRootDirectory
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IntegerGetInteger
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RandomDoubleCoercedToZero
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RemoveAllOnSelf
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ReturnFromFinallyBlock
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ThrowExceptionFromFinallyBlock
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// rulesets/braces.xml
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//ElseBlockBraces
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ForStatementBraces
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//IfStatementBraces
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//WhileStatementBraces
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// rulesets/concurrency.xml
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BusyWait
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DoubleCheckedLocking
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InconsistentPropertyLocking
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InconsistentPropertySynchronization
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NestedSynchronization
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StaticCalendarField
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StaticConnection
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StaticDateFormatField
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StaticMatcherField
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StaticSimpleDateFormatField
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SynchronizedMethod
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SynchronizedOnBoxedPrimitive
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SynchronizedOnGetClass
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SynchronizedOnReentrantLock
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SynchronizedOnString
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SynchronizedOnThis
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SynchronizedReadObjectMethod
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SystemRunFinalizersOnExit
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ThreadGroup
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ThreadLocalNotStaticFinal
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ThreadYield
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UseOfNotifyMethod
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VolatileArrayField
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VolatileLongOrDoubleField
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WaitOutsideOfWhileLoop
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// rulesets/convention.xml
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ConfusingTernary
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CouldBeElvis
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HashtableIsObsolete
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IfStatementCouldBeTernary
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InvertedIfElse
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LongLiteralWithLowerCaseL
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ParameterReassignment
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TernaryCouldBeElvis
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VectorIsObsolete
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// rulesets/design.xml
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AbstractClassWithPublicConstructor
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AbstractClassWithoutAbstractMethod
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BooleanMethodReturnsNull
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BuilderMethodWithSideEffects
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CloneableWithoutClone
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CloseWithoutCloseable
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CompareToWithoutComparable
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ConstantsOnlyInterface
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EmptyMethodInAbstractClass
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FinalClassWithProtectedMember
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ImplementationAsType
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PrivateFieldCouldBeFinal
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PublicInstanceField
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ReturnsNullInsteadOfEmptyArray
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ReturnsNullInsteadOfEmptyCollection
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SimpleDateFormatMissingLocale
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StatelessSingleton
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// rulesets/dry.xml
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DuplicateListLiteral
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DuplicateMapLiteral
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DuplicateNumberLiteral
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DuplicateStringLiteral
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// rulesets/exceptions.xml
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CatchArrayIndexOutOfBoundsException
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CatchError
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CatchException
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CatchIllegalMonitorStateException
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CatchIndexOutOfBoundsException
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CatchNullPointerException
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CatchRuntimeException
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CatchThrowable
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ConfusingClassNamedException
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ExceptionExtendsError
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ExceptionNotThrown
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MissingNewInThrowStatement
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ReturnNullFromCatchBlock
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SwallowThreadDeath
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ThrowError
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ThrowException
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ThrowNullPointerException
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ThrowRuntimeException
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ThrowThrowable
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// rulesets/generic.xml
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IllegalClassReference
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IllegalPackageReference
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IllegalRegex
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RequiredRegex
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RequiredString
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StatelessClass
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// rulesets/grails.xml
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GrailsDomainHasEquals
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GrailsDomainHasToString
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GrailsDuplicateConstraint
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GrailsDuplicateMapping
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GrailsPublicControllerMethod
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GrailsServletContextReference
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GrailsSessionReference // DEPRECATED
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GrailsStatelessService
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// rulesets/groovyism.xml
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AssignCollectionSort
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AssignCollectionUnique
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ClosureAsLastMethodParameter
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CollectAllIsDeprecated
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ConfusingMultipleReturns
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ExplicitArrayListInstantiation
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ExplicitCallToAndMethod
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ExplicitCallToCompareToMethod
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ExplicitCallToDivMethod
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ExplicitCallToEqualsMethod
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ExplicitCallToGetAtMethod
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ExplicitCallToLeftShiftMethod
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ExplicitCallToMinusMethod
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ExplicitCallToModMethod
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ExplicitCallToMultiplyMethod
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ExplicitCallToOrMethod
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ExplicitCallToPlusMethod
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ExplicitCallToPowerMethod
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ExplicitCallToRightShiftMethod
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ExplicitCallToXorMethod
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ExplicitHashMapInstantiation
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ExplicitHashSetInstantiation
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ExplicitLinkedHashMapInstantiation
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ExplicitLinkedListInstantiation
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ExplicitStackInstantiation
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ExplicitTreeSetInstantiation
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GStringAsMapKey
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GetterMethodCouldBeProperty
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GroovyLangImmutable
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UseCollectMany
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UseCollectNested
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// rulesets/imports.xml
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DuplicateImport
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ImportFromSamePackage
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ImportFromSunPackages
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MisorderedStaticImports
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UnnecessaryGroovyImport
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UnusedImport
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// rulesets/jdbc.xml
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DirectConnectionManagement
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JdbcConnectionReference
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JdbcResultSetReference
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JdbcStatementReference
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// rulesets/junit.xml
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ChainedTest
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CoupledTestCase
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JUnitAssertAlwaysFails
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JUnitAssertAlwaysSucceeds
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JUnitFailWithoutMessage
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JUnitLostTest
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JUnitPublicNonTestMethod
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JUnitSetUpCallsSuper
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JUnitStyleAssertions
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JUnitTearDownCallsSuper
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JUnitTestMethodWithoutAssert
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JUnitUnnecessarySetUp
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JUnitUnnecessaryTearDown
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JUnitUnnecessaryThrowsException
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SpockIgnoreRestUsed
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UnnecessaryFail
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UseAssertEqualsInsteadOfAssertTrue
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UseAssertFalseInsteadOfNegation
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UseAssertNullInsteadOfAssertEquals
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UseAssertSameInsteadOfAssertTrue
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UseAssertTrueInsteadOfAssertEquals
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UseAssertTrueInsteadOfNegation
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// rulesets/logging.xml
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LoggerForDifferentClass
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LoggerWithWrongModifiers
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LoggingSwallowsStacktrace
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MultipleLoggers
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PrintStackTrace
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Println
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SystemErrPrint
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SystemOutPrint
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// rulesets/naming.xml
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AbstractClassName
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ClassName
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ConfusingMethodName
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FactoryMethodName
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FieldName
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InterfaceName
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MethodName
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ObjectOverrideMisspelledMethodName
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PackageName
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ParameterName
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PropertyName
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//VariableName
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// rulesets/security.xml
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FileCreateTempFile
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InsecureRandom
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NonFinalPublicField
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NonFinalSubclassOfSensitiveInterface
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ObjectFinalize
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PublicFinalizeMethod
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SystemExit
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UnsafeArrayDeclaration
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// rulesets/serialization.xml
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SerialPersistentFields
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SerialVersionUID
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SerializableClassMustDefineSerialVersionUID
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// rulesets/size.xml
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AbcComplexity // DEPRECATED: Use the AbcMetric rule instead. Requires the GMetrics jar
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AbcMetric // Requires the GMetrics jar
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ClassSize
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CrapMetric // Requires the GMetrics jar and a Cobertura coverage file
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CyclomaticComplexity // Requires the GMetrics jar
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MethodCount
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MethodSize
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NestedBlockDepth
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// rulesets/unnecessary.xml
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AddEmptyString
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ConsecutiveLiteralAppends
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ConsecutiveStringConcatenation
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UnnecessaryBigDecimalInstantiation
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UnnecessaryBigIntegerInstantiation
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UnnecessaryBooleanExpression
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UnnecessaryBooleanInstantiation
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UnnecessaryCallForLastElement
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UnnecessaryCallToSubstring
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UnnecessaryCatchBlock
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UnnecessaryCollectCall
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UnnecessaryCollectionCall
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UnnecessaryConstructor
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UnnecessaryDefInFieldDeclaration
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//UnnecessaryDefInMethodDeclaration
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UnnecessaryDefInVariableDeclaration
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UnnecessaryDotClass
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UnnecessaryDoubleInstantiation
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UnnecessaryElseStatement
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UnnecessaryFinalOnPrivateMethod
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UnnecessaryFloatInstantiation
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//UnnecessaryGString
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//UnnecessaryGetter
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UnnecessaryIfStatement
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UnnecessaryInstanceOfCheck
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UnnecessaryInstantiationToGetClass
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UnnecessaryIntegerInstantiation
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UnnecessaryLongInstantiation
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UnnecessaryModOne
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UnnecessaryNullCheck
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UnnecessaryNullCheckBeforeInstanceOf
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UnnecessaryObjectReferences
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UnnecessaryOverridingMethod
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UnnecessaryPackageReference
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UnnecessaryParenthesesForMethodCallWithClosure
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UnnecessaryPublicModifier
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UnnecessaryReturnKeyword
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UnnecessarySelfAssignment
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UnnecessarySemicolon
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UnnecessaryStringInstantiation
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UnnecessarySubstring
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UnnecessaryTernaryExpression
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UnnecessaryTransientModifier
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// rulesets/unused.xml
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UnusedArray
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UnusedMethodParameter
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UnusedObject
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UnusedPrivateField
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UnusedPrivateMethod
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UnusedPrivateMethodParameter
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UnusedVariable
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}
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24
nextflow/config/codenarc/codenarc.xml
Normal file
24
nextflow/config/codenarc/codenarc.xml
Normal file
@@ -0,0 +1,24 @@
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<!--
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~ Copyright 2013-2026, Seqera Labs
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~
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~ Licensed under the Apache License, Version 2.0 (the "License");
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~ you may not use this file except in compliance with the License.
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~ You may obtain a copy of the License at
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~
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~ http://www.apache.org/licenses/LICENSE-2.0
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~
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~ Unless required by applicable law or agreed to in writing, software
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~ distributed under the License is distributed on an "AS IS" BASIS,
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~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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~ See the License for the specific language governing permissions and
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~ limitations under the License.
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-->
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<ruleset xmlns="http://codenarc.org/ruleset/1.0"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://codenarc.org/ruleset/1.0 http://codenarc.org/ruleset-schema.xsd"
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xsi:noNamespaceSchemaLocation="http://codenarc.org/ruleset-schema.xsd">
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<ruleset-ref path='file:./config/codenarc/codenarc.groovy'/>
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</ruleset>
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Reference in New Issue
Block a user