add nextflow d30e48d

nextflow/Makefile

@@ -0,0 +1,142 @@
+#
+#  Copyright 2013-2024, Seqera Labs
+#
+#  Licensed under the Apache License, Version 2.0 (the "License");
+#  you may not use this file except in compliance with the License.
+#  You may obtain a copy of the License at
+#
+#      http://www.apache.org/licenses/LICENSE-2.0
+#
+#  Unless required by applicable law or agreed to in writing, software
+#  distributed under the License is distributed on an "AS IS" BASIS,
+#  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#  See the License for the specific language governing permissions and
+#  limitations under the License.
+
+
+#
+# add parameters to the command line as `param=value` for example:
+# make deps config=runtime
+# 
+
+config ?= compileClasspath
+
+ifdef module 
+mm = :${module}:
+else 
+mm = 
+endif 
+
+compile:
+	./gradlew compile exportClasspath
+	@echo "DONE `date`"
+
+assemble:
+	./gradlew buildInfo compile assemble
+
+releaseInfo:
+	./gradlew releaseInfo
+
+check:
+	./gradlew check
+
+clean:
+	rm -rf .nextflow*
+	rm -rf work 
+	rm -rf modules/nextflow/.nextflow*
+	rm -rf modules/nextflow/work
+	rm -rf build
+	rm -rf modules/*/build
+	rm -rf plugins/*/build
+	./gradlew clean
+
+#
+# install compiled artifacts in Maven local dir
+# 
+install:
+	BUILD_PACK=1 \
+	./gradlew installLauncher publishToMavenLocal installPlugin
+
+installScratch:
+	BUILD_PACK=1 \
+	./gradlew installScratch publishToMavenLocal installPlugin
+
+#
+# Show dependencies try `make deps config=runtime`, `make deps config=google`
+#
+deps:
+	./gradlew -q ${mm}dependencies --configuration ${config}
+
+deps-all:
+	./gradlew -q dependencyInsight --configuration ${config} --dependency ${module}
+
+#
+# Refresh SNAPSHOTs dependencies
+#
+refresh:
+	./gradlew --refresh-dependencies 
+
+#
+# Run all tests or selected ones
+#
+test:
+ifndef class
+	./gradlew ${mm}test
+else
+	./gradlew ${mm}test --tests ${class}
+endif
+
+#
+# Run smoke tests
+#
+smoke:
+	NXF_SMOKE=1 ./gradlew ${mm}test
+
+#
+# Upload JAR artifacts to Maven Central
+#
+upload:
+	./gradlew upload
+
+#
+# Create self-contained distribution package
+#
+pack:
+	BUILD_PACK=1 ./gradlew pack
+
+#
+# Upload NF launcher to nextflow.io web site
+#
+deploy:
+	BUILD_PACK=1 ./gradlew deploy
+
+#
+# Close artifacts uploaded to Maven central
+#
+close:
+	./gradlew closeAndReleaseRepository
+
+#
+# Upload final package to GitHub
+#
+release:
+	BUILD_PACK=1 ./gradlew release
+
+#
+# Create and upload docker image distribution
+#
+dockerImage:
+	BUILD_PACK=1 ./gradlew dockerImage
+
+#
+# Create local docker image
+#
+dockerPack:
+	BUILD_PACK=1 ./gradlew publishToMavenLocal dockerPack -Dmaven.repo.local=${PWD}/build/docker/.nextflow/capsule/deps/ installPlugin
+
+release-plugins:
+	./gradlew releasePluginToRegistryIfNotExists
+
+publish-artifacts:
+	./gradlew publishAllPublicationsToSeqeraRepository
+