add nextflow d30e48d

nextflow/.specify/templates/agent-file-template.md

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+# [PROJECT NAME] Development Guidelines
+
+Auto-generated from all feature plans. Last updated: [DATE]
+
+## Active Technologies
+
+[EXTRACTED FROM ALL PLAN.MD FILES]
+
+## Project Structure
+
+```text
+[ACTUAL STRUCTURE FROM PLANS]
+```
+
+## Commands
+
+[ONLY COMMANDS FOR ACTIVE TECHNOLOGIES]
+
+## Code Style
+
+[LANGUAGE-SPECIFIC, ONLY FOR LANGUAGES IN USE]
+
+## Recent Changes
+
+[LAST 3 FEATURES AND WHAT THEY ADDED]
+
+<!-- MANUAL ADDITIONS START -->
+<!-- MANUAL ADDITIONS END -->