fix: actually use banded strategy when requested

2026-09-11 20:21:50 +02:00
parent dfae78af71
commit 27655dc1b8
6 changed files with 54 additions and 2 deletions
--- a/sarek-1/run.sh
+++ b/sarek-1/run.sh
@@ -0,0 +1,5 @@
+#!/bin/sh
+
+cp samplesheet.csv /workspace/launch/samplesheet.csv
+cp *.fastq.gz /workspace/launch/.
+time nextflow run -c nextflow.config  nf-core/sarek -r 3.9.0 -profile docker --genome GRCm38 --input samplesheet.csv --outdir out --skip-tools multiqc