diff --git a/.gitignore b/.gitignore
index 1b5f5a5..e92b837 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,2 +1,4 @@
 cleanup-volume-claim.sh
 build.sh
+*.tar.gz
+Dockerfile
diff --git a/sarek-1/.gitignore b/sarek/.gitignore
similarity index 100%
rename from sarek-1/.gitignore
rename to sarek/.gitignore
diff --git a/sarek-1/clean.sh b/sarek/clean.sh
similarity index 100%
rename from sarek-1/clean.sh
rename to sarek/clean.sh
diff --git a/sarek/nextflow-k8s.config b/sarek/nextflow-k8s.config
new file mode 100644
index 0000000..7558195
--- /dev/null
+++ b/sarek/nextflow-k8s.config
@@ -0,0 +1,24 @@
+workDir = '/workspace'
+
+process {
+	executor = 'k8s'
+	//container = 'ubuntu:22.04'
+
+	pod = [
+		imagePullPolicy: 'IfNotPresent'
+	]
+}
+
+k8s {
+	namespace = 'trogantk'
+
+	storageClaimName = 'cephfs-trogantk'
+	storageMountPath = '/workspace'
+	launchDir = '/workspace/launch'
+	projectDir = '/workspace/projects'
+	cleanup = true
+
+	pod = [
+		nodeSelector: [usedby: 'trogantk']
+	]
+}
diff --git a/sarek-1/nextflow.config b/sarek/nextflow.config
similarity index 100%
rename from sarek-1/nextflow.config
rename to sarek/nextflow.config
diff --git a/sarek/run-k8s.sh b/sarek/run-k8s.sh
new file mode 100644
index 0000000..fe4019b
--- /dev/null
+++ b/sarek/run-k8s.sh
@@ -0,0 +1,9 @@
+#!/bin/sh
+SIZE=1
+if [ "$#" -eq 1 ]; then
+  SIZE=$1
+fi
+
+cp samplesheet${SIZE}.csv /workspace/launch/samplesheet.csv
+cp *.fastq.gz /workspace/launch/.
+time nextflow run -c nextflow-k8s.config  nf-core/sarek -r 3.9.0 -profile docker --genome GRCm38 --input samplesheet.csv --outdir out --skip_tools multiqc
diff --git a/sarek-1/run.sh b/sarek/run.sh
similarity index 57%
rename from sarek-1/run.sh
rename to sarek/run.sh
index 64acba2..85c203f 100644
--- a/sarek-1/run.sh
+++ b/sarek/run.sh
@@ -1,5 +1,10 @@
 #!/bin/sh
 
-cp samplesheet.csv /workspace/launch/samplesheet.csv
+SIZE=1
+if [ "$#" -eq 1 ]; then
+  SIZE=$1
+fi
+
+cp samplesheet${SIZE}.csv /workspace/launch/samplesheet.csv
 cp *.fastq.gz /workspace/launch/.
-time nextflow run -c nextflow.config  nf-core/sarek -r 3.9.0 -profile docker --genome GRCm38 --input samplesheet.csv --outdir out --skip-tools multiqc
+time nextflow run -c nextflow.config  nf-core/sarek -r 3.9.0 -profile docker --genome GRCm38 --input samplesheet.csv --outdir out --skip_tools multiqc
diff --git a/sarek-1/samplesheet.csv b/sarek/samplesheet1.csv
similarity index 100%
rename from sarek-1/samplesheet.csv
rename to sarek/samplesheet1.csv
diff --git a/sarek/samplesheet3.csv b/sarek/samplesheet3.csv
new file mode 100644
index 0000000..988e6db
--- /dev/null
+++ b/sarek/samplesheet3.csv
@@ -0,0 +1,4 @@
+patient,sample,lane,fastq_1,fastq_2
+ID1,S1,L001,SRR27016609_1.fastq.gz,SRR27016609_2.fastq.gz
+ID1,S2,L001,SRR27016607_1.fastq.gz,SRR27016607_2.fastq.gz
+ID1,S3,L001,SRR27016605_1.fastq.gz,SRR27016605_2.fastq.gz