set -e

#
# basic run 
#
echo ''
$NXF_RUN > stdout
[[ `<stdout grep -c 'Hello world!'` == 1 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo'` == 1 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > bar'` == 1 ]] || false
( cd foo; 
[[ -s f1.fa ]] || false
[[ -s f2.fa ]] || false
[[ -s f3.fa ]] || false
[[ -s hello.txt ]] || false
[[ -s sample.zip ]] || false
[[ -s sample.html ]] || false
[[ -s '01_A(R1).fastq' ]] || false
[[ -s '01_A(R2).fastq' ]] || false
[[ -s 'sample_(1 2).vcf' ]] || false
[[ -s .alpha/hello.txt ]] || false
)

#
# resume 
# 
rm -rf foo 
echo ''
$NXF_RUN -resume > stdout
[[ `<stdout grep -c 'Hello world!'` == 1 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > foo'` == 1 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > bar'` == 1 ]] || false
( cd foo; 
[[ -s f1.fa ]] || false
[[ -s f2.fa ]] || false
[[ -s f3.fa ]] || false
[[ -s hello.txt ]] || false
[[ -s sample.zip ]] || false
[[ -s sample.html ]] || false
[[ -s '01_A(R1).fastq' ]] || false
[[ -s '01_A(R2).fastq' ]] || false
[[ -s 'sample_(1 2).vcf' ]] || false
[[ -s .alpha/hello.txt ]] || false
)